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IQSEC3-AS2 IQSEC3 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 105369593, updated on 8-Nov-2023

Summary

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Official Symbol
IQSEC3-AS2provided by HGNC
Official Full Name
IQSEC3 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:56741
See related
Ensembl:ENSG00000256948
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lung (RPKM 2.2), bone marrow (RPKM 0.6) and 5 other tissues See more
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Genomic context

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Location:
12p13.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (106524..111761, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (99511..104747, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987170 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr12:66685-67402 Neighboring gene family with sequence similarity 138 member D Neighboring gene IQ motif and Sec7 domain ArfGEF 3 Neighboring gene uncharacterized LOC574538 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:254331-254832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:254833-255332 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:262202-263116 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:277504-277977 Neighboring gene IQSEC3 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:282005-282530 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:282531-283057 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:283058-283583 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:287986-288528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:291153-291654

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Autophagy-Related Long Non-coding RNA Is a Prognostic Indicator for Bladder Cancer. Wan J, et al. Front Oncol, 2021. PMID 33869042, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC026369.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184284.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026369
    Related
    ENST00000540226.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    106524..111761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003571049.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    100539..105776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    99511..104747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases