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LINC02697 long intergenic non-protein coding RNA 2697 [ Homo sapiens (human) ]

Gene ID: 105369586, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02697provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2697provided by HGNC
Primary source
HGNC:HGNC:54211
See related
AllianceGenome:HGNC:54211
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward thyroid (RPKM 5.5) See more
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Genomic context

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See LINC02697 in Genome Data Viewer
Location:
11q25
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (134950989..134962734)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (134998908..135010653)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2706 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134599270-134599886 Neighboring gene Sharpr-MPRA regulatory region 2456 Neighboring gene long intergenic non-protein coding RNA 2714 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:134617746-134618945 Neighboring gene NANOG hESC enhancer GRCh37_chr11:134618982-134619663 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134671658-134672158 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:134721213-134722412 Neighboring gene Sharpr-MPRA regulatory region 927 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134775628-134776555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134811107-134811935 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134817200-134817700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134817701-134818201 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:134818754-134819953 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:134831501-134832001 Neighboring gene uncharacterized LOC100507548 Neighboring gene uncharacterized LOC105369587 Neighboring gene long intergenic non-protein coding RNA 2717

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187395.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003062

  2. NR_187396.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003062

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    134950989..134962734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187581.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    174570..186111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    134998908..135010653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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