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LINC02098 long intergenic non-protein coding RNA 2098 [ Homo sapiens (human) ]

Gene ID: 105369564, updated on 10-Oct-2023

Summary

Official Symbol
LINC02098provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2098provided by HGNC
Primary source
HGNC:HGNC:52950
See related
Ensembl:ENSG00000272575 AllianceGenome:HGNC:52950
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
11q24.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (128208766..128241441)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (128242033..128274698)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (128078661..128111336)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984374 Neighboring gene long intergenic non-protein coding RNA 2725 Neighboring gene NANOG hESC enhancer GRCh37_chr11:128080242-128080743 Neighboring gene Sharpr-MPRA regulatory region 14954 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5713 Neighboring gene uncharacterized LOC124902786 Neighboring gene uncharacterized LOC124902787 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4053 Neighboring gene CAGE-defined T cell enhancer downstream of ETS1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146647.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA446199, AA446200, BU561672
    Related
    ENST00000608492.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    128208766..128241441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    128242033..128274698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)