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sxc O-linked N-acetylglucosamine (GlcNAc) transferase sxc [ Ceratosolen solmsi marchali ]

Gene ID: 105360543, updated on 10-Oct-2024

Summary

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Gene symbol
sxc
Gene description
O-linked N-acetylglucosamine (GlcNAc) transferase sxc
Gene type
protein coding
RefSeq status
MODEL
Organism
Ceratosolen solmsi marchali (sub-species: marchali)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Agaonidae; Agaoninae; Ceratosolen
Orthologs
fruit fly honey bee all
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Genomic context

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See sxc in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current CerSol_1.0 (GCF_000503995.1) Unplaced Scaffold NW_011948419.1 (3225035..3304295, complement)

NW_011948419.1Genomic Context describing neighboring genes Neighboring gene heat shock protein 90 Neighboring gene putative uncharacterized protein DDB_G0271982 Neighboring gene uncharacterized LOC105360542 Neighboring gene excitatory amino acid transporter 1-like Neighboring gene nucleoside diphosphate kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011948419.1 Unplaced Scaffold Reference CerSol_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ceratosolen solmsi marchali Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CerSol_1.0

Genomic

  1. NW_011948419.1 Reference CerSol_1.0

    Range
    3225035..3304295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011497473.1 → XP_011495775.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

    UniProtKB/TrEMBL
    A0AAJ6YCV0
    Conserved Domains (10) summary
    cd05804
    Location:159 → 319
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    COG0457
    Location:243 → 500
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:374 → 1062
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:265 → 292
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:128 → 161
    TPR_1; Tetratricopeptide repeat
    pfam13374
    Location:366 → 395
    TPR_10; Tetratricopeptide repeat
    pfam13414
    Location:128 → 193
    TPR_11; TPR repeat
    pfam13424
    Location:192 → 262
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:320 → 353
    TPR_17; Tetratricopeptide repeat
    pfam13844
    Location:592 → 1059
    Glyco_transf_41; Glycosyl transferase family 41
Nucleotide Protein
Heading Accession and Version

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