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LOC105339507 cys-loop ligand-gated ion channel [ Magallana gigas (Pacific oyster) ]

Gene ID: 105339507, updated on 3-Aug-2024

Summary

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Gene symbol
LOC105339507
Gene description
cys-loop ligand-gated ion channel
Locus tag
CGI_10009800
Gene type
protein coding
RefSeq status
MODEL
Organism
Magallana gigas
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Magallana
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Genomic context

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See LOC105339507 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current xbMagGiga1.1 (GCF_963853765.1) 6 NC_088858.1 (49089033..49093712, complement)
102 previous assembly cgigas_uk_roslin_v1 (GCF_902806645.1) Linkage Group 3 NC_047561.1 (8441485..8445909)

Chromosome 6 - NC_088858.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL22 Neighboring gene uncharacterized LOC105339498 Neighboring gene uncharacterized LOC105339527 Neighboring gene uncharacterized LOC105327813

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sodium molybdate does not inhibit sulfate-reducing bacteria but increases shell growth in the Pacific oyster Magallana gigas. Banker RMW, et al. PLoS One, 2022. PMID 35139090, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular ligand-gated monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neurotransmitter receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cys-loop ligand-gated ion channel
Names
Acetylcholine receptor subunit alpha-type deg-3
gamma-aminobutyric acid receptor exp-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963853765.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbMagGiga1.1

Genomic

  1. NC_088858.1 Reference xbMagGiga1.1

    Range
    49089033..49093712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066087707.1 → XP_065943779.1  cys-loop ligand-gated ion channel isoform X1

  2. XM_011445080.4 → XP_011443382.3  cys-loop ligand-gated ion channel isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases