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LOC105324538 aspartyl/asparaginyl beta-hydroxylase [ Magallana gigas (Pacific oyster) ]

Gene ID: 105324538, updated on 31-Jul-2024

Summary

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Gene symbol
LOC105324538
Gene description
aspartyl/asparaginyl beta-hydroxylase
Locus tag
CGI_10001813
See related
EnsemblRapid:ENSBDJG00000022332
Gene type
protein coding
RefSeq status
MODEL
Organism
Magallana gigas
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Magallana
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Genomic context

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See LOC105324538 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current xbMagGiga1.1 (GCF_963853765.1) 5 NC_088857.1 (34401583..34412750)
102 previous assembly cgigas_uk_roslin_v1 (GCF_902806645.1) Linkage Group 1 NC_047559.1 (32991965..33010432)

Chromosome 5 - NC_088857.1Genomic Context describing neighboring genes Neighboring gene melanocortin receptor 3 Neighboring gene ankyrin repeat and sterile alpha motif domain-containing protein 1B Neighboring gene lysoplasmalogenase TMEM86A Neighboring gene uncharacterized LOC105324539 Neighboring gene uncharacterized LOC117682122

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963853765.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbMagGiga1.1

Genomic

  1. NC_088857.1 Reference xbMagGiga1.1

    Range
    34401583..34412750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020065602.3 → XP_019921161.3  aspartyl/asparaginyl beta-hydroxylase isoform X1

  2. XM_066084708.1 → XP_065940780.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Related
    ENSBDJP00000028180.1, ENSBDJT00000032403.1
Nucleotide Protein
Heading Accession and Version

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