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LOC105317566 chitin synthase chs-2 [ Magallana gigas (Pacific oyster) ]

Gene ID: 105317566, updated on 3-Aug-2024

Summary

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Gene symbol
LOC105317566
Gene description
chitin synthase chs-2
Locus tag
CGI_10010455
Gene type
protein coding
RefSeq status
MODEL
Organism
Magallana gigas
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Magallana
Also known as
Myosin-4
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Genomic context

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See LOC105317566 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
39
Annotation release Status Assembly Chr Location
RS_2024_06 current xbMagGiga1.1 (GCF_963853765.1) 5 NC_088857.1 (7582899..7641209)
102 previous assembly cgigas_uk_roslin_v1 (GCF_902806645.1) Linkage Group 1 NC_047559.1 (7421849..7484648)

Chromosome 5 - NC_088857.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105328684 Neighboring gene chitin synthase chs-2 Neighboring gene tripartite motif-containing protein 2 Neighboring gene immunoglobulin superfamily member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microfilament motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle transport along actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitin synthase chs-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963853765.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbMagGiga1.1

Genomic

  1. NC_088857.1 Reference xbMagGiga1.1

    Range
    7582899..7641209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066084927.1 → XP_065940999.1  chitin synthase chs-2

Nucleotide Protein
Heading Accession and Version

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