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LOC105312802 zeta-sarcoglycan-like [ Amphimedon queenslandica ]

Gene ID: 105312802, updated on 7-Dec-2023

Summary

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Gene symbol
LOC105312802
Gene description
zeta-sarcoglycan-like
See related
EnsemblRapid:LOC105312802
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphimedon queenslandica
Lineage
Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Haplosclerida; Niphatidae; Amphimedon
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Genomic context

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See LOC105312802 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current v1.0 (GCF_000090795.1) Unplaced Scaffold NW_003546361.1 (84507..89676)

NW_003546361.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 51-like Neighboring gene uncharacterized LOC109582055 Neighboring gene acylglycerol kinase, mitochondrial-like Neighboring gene uncharacterized LOC100635484 Neighboring gene leucine-rich repeat and transmembrane domain-containing protein 1-like Neighboring gene nucleolar protein 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003546361.1 Unplaced Scaffold Reference v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amphimedon queenslandica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0 Primary Assembly

Genomic

  1. NW_003546361.1 Reference v1.0 Primary Assembly

    Range
    84507..89676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011405724.2 → XP_011404026.2  zeta-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A1X7UUZ0
    Related
    XP_011404026.2, XM_011405724.2
    Conserved Domains (1) summary
    pfam04790
    Location:13 → 267
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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