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B4GALNT1 beta-1,4-N-acetyl-galactosaminyltransferase 1 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105307389, updated on 30-Mar-2024

Summary

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Gene symbol
B4GALNT1
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See B4GALNT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889274.1 (213145..220079, complement)

NW_011889274.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 25 Neighboring gene Solute carrier family 26 member 10 Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 Neighboring gene uncharacterized LOC111732800

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889274 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889274.1 Reference Pvam_2.0

    Range
    213145..220079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023524775.1 → XP_023380543.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P6BZJ3
    Conserved Domains (1) summary
    pfam00535
    Location:244 → 393
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_011382884.2 → XP_011381186.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X2

    See identical proteins and their annotated locations for XP_011381186.1

    UniProtKB/TrEMBL
    A0A6P6BZR4
    Conserved Domains (1) summary
    pfam00535
    Location:280 → 429
    Glycos_transf_2; Glycosyl transferase family 2

  3. XM_023524773.1 → XP_023380541.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P6BZI6
    Conserved Domains (1) summary
    pfam00535
    Location:299 → 448
    Glycos_transf_2; Glycosyl transferase family 2

  4. XM_023524774.1 → XP_023380542.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P6BZR4
    Conserved Domains (1) summary
    pfam00535
    Location:280 → 429
    Glycos_transf_2; Glycosyl transferase family 2
Nucleotide Protein
Heading Accession and Version

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