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B4GALNT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group) [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105307237, updated on 30-Mar-2024

Summary

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Gene symbol
B4GALNT2
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group)
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See B4GALNT2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889267.1 (230057..269749, complement)

NW_011889267.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene 5S ribosomal RNA Neighboring gene insulin like growth factor 2 mRNA binding protein 1 Neighboring gene gastric inhibitory polypeptide

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889267 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-N-acetylgalactosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in UDP-N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889267.1 Reference Pvam_2.0

    Range
    230057..269749 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011382638.2 → XP_011380940.2  beta-1,4 N-acetylgalactosaminyltransferase 2

    UniProtKB/TrEMBL
    A0A6P3RPS5
    Conserved Domains (1) summary
    pfam00535
    Location:259 → 365
    Glycos_transf_2; Glycosyl transferase family 2

RNA

  1. XR_002777680.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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