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PBX1 PBX homeobox 1 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105306027, updated on 30-Mar-2024

Summary

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Gene symbol
PBX1
Gene description
PBX homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See PBX1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889195.1 (81587..350608, complement)

NW_011889195.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111731957 Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889195 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-B-cell leukemia transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889195.1 Reference Pvam_2.0

    Range
    81587..350608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011380903.2 → XP_011379205.1  pre-B-cell leukemia transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3RL34
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  2. XM_023523794.1 → XP_023379562.1  pre-B-cell leukemia transcription factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P6BWQ8
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  3. XM_023523798.1 → XP_023379566.1  pre-B-cell leukemia transcription factor 1 isoform X6

    UniProtKB/TrEMBL
    A0A6P6BWR1
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  4. XM_023523797.1 → XP_023379565.1  pre-B-cell leukemia transcription factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A6P6BXE0
    Conserved Domains (2) summary
    cd00086
    Location:154 → 214
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:6 → 152
    PBC; PBC domain

  5. XM_023523796.1 → XP_023379564.1  pre-B-cell leukemia transcription factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P6BWY2
    Conserved Domains (2) summary
    cd00086
    Location:156 → 216
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:12 → 154
    PBC; PBC domain

  6. XM_023523795.1 → XP_023379563.1  pre-B-cell leukemia transcription factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P6BWR3
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain
Nucleotide Protein
Heading Accession and Version

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