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RGN regucalcin [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105305448, updated on 30-Mar-2024

Summary

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Gene symbol
RGN
Gene description
regucalcin
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See RGN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889168.1 (3513969..3525637)

NW_011889168.1Genomic Context describing neighboring genes Neighboring gene RP2 activator of ARL3 GTPase Neighboring gene elongation factor 1-alpha 1 pseudogene Neighboring gene jade family PHD finger 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit B11 Neighboring gene RNA binding motif protein 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889168 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables gluconolactonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-ascorbic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regucalcin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889168.1 Reference Pvam_2.0

    Range
    3513969..3525637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011380050.1 → XP_011378352.1  regucalcin isoform X1

    UniProtKB/TrEMBL
    A0A6P3RAY2
    Conserved Domains (4) summary
    cd05819
    Location:205 → 239
    NHL; NHL repeat [structural motif]
    pfam08450
    Location:18 → 266
    SGL; SMP-30/Gluconolaconase/LRE-like region
    sd00039
    Location:108 → 142
    7WD40; WD40 repeat [structural motif]
    cl18310
    Location:168 → 239
    NHL; NHL repeat unit of beta-propeller proteins

  2. XM_011380051.2 → XP_011378353.1  regucalcin isoform X2

    UniProtKB/TrEMBL
    A0A6P3RD23
    Conserved Domains (3) summary
    pfam08450
    Location:16 → 192
    SGL; SMP-30/Gluconolaconase/LRE-like region
    sd00039
    Location:131 → 167
    7WD40; WD40 repeat [structural motif]
    cl18310
    Location:61 → 160
    NHL; NHL repeat unit of beta-propeller proteins
Nucleotide Protein
Heading Accession and Version

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