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CHST6 carbohydrate sulfotransferase 6 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105305359, updated on 30-Mar-2024

Summary

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Gene symbol
CHST6
Gene description
carbohydrate sulfotransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human all
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Genomic context

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See CHST6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889160.1 (781650..798733, complement)

NW_011889160.1Genomic Context describing neighboring genes Neighboring gene craniofacial development protein 1 Neighboring gene 5S ribosomal RNA Neighboring gene transmembrane protein 170A Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene 5S ribosomal RNA Neighboring gene transmembrane protein 231

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889160 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889160.1 Reference Pvam_2.0

    Range
    781650..798733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023523156.1 → XP_023378924.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A6P3RR49
    Conserved Domains (1) summary
    pfam13469
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  2. XM_023523155.1 → XP_023378923.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A6P3RR49
    Conserved Domains (1) summary
    pfam13469
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  3. XM_023523154.1 → XP_023378922.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A6P3RR49
    Conserved Domains (1) summary
    pfam13469
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  4. XM_023523158.1 → XP_023378926.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A6P3RR49
    Conserved Domains (1) summary
    pfam13469
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  5. XM_023523157.1 → XP_023378925.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A6P3RR49
    Conserved Domains (1) summary
    pfam13469
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  6. XM_011379943.2 → XP_011378245.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_011378245.1

    UniProtKB/TrEMBL
    A0A6P3RR49
    Conserved Domains (1) summary
    pfam13469
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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