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HCFC1 host cell factor C1 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105302488, updated on 30-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889056.1 (621577..644987, complement)

NW_011889056.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 4 Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene renin binding protein Neighboring gene transmembrane protein 187 Neighboring gene interleukin 1 receptor associated kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889056 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889056.1 Reference Pvam_2.0

    Range
    621577..644987 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011375546.2 → XP_011373848.1  host cell factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A6P3R190
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1869 → 1898
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  2. XM_011375547.2 → XP_011373849.1  host cell factor 1 isoform X7

    UniProtKB/TrEMBL
    A0A6P3R203
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1868 → 1897
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  3. XM_011375545.2 → XP_011373847.1  host cell factor 1 isoform X6

    UniProtKB/TrEMBL
    A0A6P3R9X9
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1869 → 1898
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  4. XM_011375544.2 → XP_011373846.1  host cell factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P3RH22
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1912 → 1941
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  5. XM_011375542.2 → XP_011373844.1  host cell factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P3R1Z7
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1912 → 1941
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  6. XM_023520633.1 → XP_023376401.1  host cell factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P6BMV1
    Conserved Domains (5) summary
    cd00063
    Location:1912 → 1941
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif
    cl25496
    Location:449 → 832
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl26061
    Location:10 → 322
    PLN02193; nitrile-specifier protein

  7. XM_011375541.2 → XP_011373843.1  host cell factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3R180
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1913 → 1942
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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