U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TMTC2 transmembrane O-mannosyltransferase targeting cadherins 2 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105301991, updated on 30-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TMTC2
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TMTC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888790.1 (15080771..15451142)

NW_011888790.1Genomic Context describing neighboring genes Neighboring gene methyltransferase like 25 Neighboring gene coiled-coil domain containing 59 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene heterogeneous nuclear ribonucleoprotein D-like pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_011888790 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transmembrane and TPR repeat-containing protein 2
Names
transmembrane and tetratricopeptide repeat containing 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888790.1 Reference Pvam_2.0

    Range
    15080771..15451142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011374929.2 → XP_011373231.1  transmembrane and TPR repeat-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6P3QZW8
    Conserved Domains (7) summary
    sd00006
    Location:527 → 555
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:779 → 812
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:609 → 638
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:247 → 318
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:493 → 554
    TPR_11; TPR repeat
    pfam13424
    Location:557 → 634
    TPR_12; Tetratricopeptide repeat
    pfam14559
    Location:755 → 822
    TPR_19; Tetratricopeptide repeat

  2. XM_023521201.1 → XP_023376969.1  transmembrane and TPR repeat-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A6P6BPH6
    Conserved Domains (4) summary
    COG0457
    Location:236 → 467
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:398 → 578
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:282 → 310
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:3 → 73
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_023521197.1 → XP_023376965.1  transmembrane and TPR repeat-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6P6BPK4
    Conserved Domains (3) summary
    COG0457
    Location:481 → 722
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:527 → 555
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:248 → 318
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_023521189.1 → XP_023376957.1  transmembrane and TPR repeat-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6P6BPK3
    Conserved Domains (4) summary
    COG0457
    Location:467 → 708
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:513 → 541
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:234 → 304
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:629 → 809
    TPR_11; TPR repeat

  5. XM_023521206.1 → XP_023376974.1  transmembrane and TPR repeat-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A6P6BPH6
    Conserved Domains (4) summary
    COG0457
    Location:236 → 467
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:398 → 578
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:282 → 310
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:3 → 73
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.