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SYNJ1 synaptojanin 1 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105301258, updated on 30-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889014.1 (446671..532843)

NW_011889014.1Genomic Context describing neighboring genes Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene 5S ribosomal RNA Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene 5S ribosomal RNA Neighboring gene cilia and flagella associated protein 298 Neighboring gene 40S ribosomal protein S3a-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889014 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889014.1 Reference Pvam_2.0

    Range
    446671..532843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023519722.1 → XP_023375490.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P6BK87
    Conserved Domains (4) summary
    cd09098
    Location:568 → 903
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:902 → 1043
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1165 → 1470
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:100 → 523
    Syja_N; SacI homology domain

  2. XM_023519723.1 → XP_023375491.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A6P6BKC3
    Conserved Domains (4) summary
    cd09098
    Location:568 → 903
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:902 → 1043
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1092 → 1457
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:100 → 523
    Syja_N; SacI homology domain

  3. XM_011373841.2 → XP_011372143.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A6P3R6F6
    Conserved Domains (3) summary
    cd09098
    Location:568 → 903
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:902 → 1043
    DUF1866; Domain of unknown function (DUF1866)

  4. XM_023519724.1 → XP_023375492.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A6P6BK75
    Conserved Domains (4) summary
    cd09098
    Location:568 → 903
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:902 → 1043
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1092 → 1453
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:100 → 523
    Syja_N; SacI homology domain

  5. XM_023519725.1 → XP_023375493.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A6P6BK80
    Conserved Domains (3) summary
    cd09098
    Location:568 → 903
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:902 → 1043
    DUF1866; Domain of unknown function (DUF1866)
    cl27434
    Location:100 → 523
    Syja_N; SacI homology domain
Nucleotide Protein
Heading Accession and Version

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