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DERA deoxyribose-phosphate aldolase [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105300633, updated on 30-Mar-2024

Summary

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Gene symbol
DERA
Gene description
deoxyribose-phosphate aldolase
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See DERA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888997.1 (3065639..3209885, complement)

NW_011888997.1Genomic Context describing neighboring genes Neighboring gene microsomal glutathione S-transferase 1 Neighboring gene 5S ribosomal RNA Neighboring gene solute carrier family 15 member 5 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene serine/threonine kinase receptor associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888997 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyribose-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deoxyribonucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxyribose-phosphate aldolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888997.1 Reference Pvam_2.0

    Range
    3065639..3209885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023538250.1 → XP_023394018.1  deoxyribose-phosphate aldolase isoform X2

    UniProtKB/TrEMBL
    A0A6P6D341
    Conserved Domains (1) summary
    cd00959
    Location:50 → 277
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

  2. XM_011372945.2 → XP_011371247.1  deoxyribose-phosphate aldolase isoform X1

    UniProtKB/TrEMBL
    A0A6P3QWV7
    Conserved Domains (1) summary
    cd00959
    Location:50 → 277
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family
Nucleotide Protein
Heading Accession and Version

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