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WNT5A Wnt family member 5A [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105299863, updated on 30-Mar-2024

Summary

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Gene symbol
WNT5A
Gene description
Wnt family member 5A
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See WNT5A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888976.1 (3106674..3128929)

NW_011888976.1Genomic Context describing neighboring genes Neighboring gene ELKS/RAB6-interacting/CAST family member 2 Neighboring gene ATP synthase subunit gamma, mitochondrial pseudogene Neighboring gene uncharacterized LOC111746603 Neighboring gene 5S ribosomal RNA Neighboring gene thymosin beta-4 pseudogene Neighboring gene uncharacterized LOC111746608

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888976 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables frizzled binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Wnt-5a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888976.1 Reference Pvam_2.0

    Range
    3106674..3128929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023537600.1 → XP_023393368.1  protein Wnt-5a isoform X1

    UniProtKB/TrEMBL
    A0A6P6D1B7
    Conserved Domains (1) summary
    cd19347
    Location:105 → 416
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  2. XM_023537603.1 → XP_023393371.1  protein Wnt-5a isoform X4

    UniProtKB/TrEMBL
    A0A6P6D0R1
    Conserved Domains (1) summary
    cd19347
    Location:72 → 383
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  3. XM_011371820.2 → XP_011370122.1  protein Wnt-5a isoform X5

    See identical proteins and their annotated locations for XP_011370122.1

    UniProtKB/TrEMBL
    A0A6P3QUH7
    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  4. XM_023537602.1 → XP_023393370.1  protein Wnt-5a isoform X3

    UniProtKB/TrEMBL
    A0A6P6D2E9
    Conserved Domains (1) summary
    cd19347
    Location:75 → 386
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  5. XM_023537604.1 → XP_023393372.1  protein Wnt-5a isoform X5

    UniProtKB/TrEMBL
    A0A6P3QUH7
    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  6. XM_023537605.1 → XP_023393373.1  protein Wnt-5a isoform X5

    UniProtKB/TrEMBL
    A0A6P3QUH7
    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  7. XM_023537608.1 → XP_023393376.1  protein Wnt-5a isoform X5

    UniProtKB/TrEMBL
    A0A6P3QUH7
    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  8. XM_023537607.1 → XP_023393375.1  protein Wnt-5a isoform X5

    UniProtKB/TrEMBL
    A0A6P3QUH7
    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  9. XM_023537601.1 → XP_023393369.1  protein Wnt-5a isoform X2

    UniProtKB/TrEMBL
    A0A6P6D0R4
    Conserved Domains (1) summary
    cd19347
    Location:120 → 431
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  10. XM_011371821.2 → XP_011370123.1  protein Wnt-5a isoform X5

    See identical proteins and their annotated locations for XP_011370123.1

    UniProtKB/TrEMBL
    A0A6P3QUH7
    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins
Nucleotide Protein
Heading Accession and Version

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