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VCAM1 vascular cell adhesion molecule 1 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105297551, updated on 30-Mar-2024

Summary

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Gene symbol
VCAM1
Gene description
vascular cell adhesion molecule 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See VCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888787.1 (13546058..13562282, complement)

NW_011888787.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 7 Neighboring gene exostosin like glycosyltransferase 2 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888787 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vascular cell adhesion protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888787.1 Reference Pvam_2.0

    Range
    13546058..13562282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011368304.2 → XP_011366606.1  vascular cell adhesion protein 1

    UniProtKB/TrEMBL
    A0A6P3QL02
    Conserved Domains (6) summary
    cd00096
    Location:43 → 109
    Ig; Immunoglobulin domain
    cd07689
    Location:404 → 502
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:238 → 295
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:321 → 398
    IG_like; Immunoglobulin like
    pfam07679
    Location:26 → 112
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:606 → 672
    Ig_3; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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