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CALR3 calreticulin 3 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105296648, updated on 30-Mar-2024

Summary

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Gene symbol
CALR3
Gene description
calreticulin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See CALR3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888907.1 (4702000..4720066)

NW_011888907.1Genomic Context describing neighboring genes Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene chromosome unknown C19orf44 homolog Neighboring gene uncharacterized protein C19orf44 pseudogene Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene epidermal growth factor receptor pathway substrate 15 like 1 Neighboring gene 5S ribosomal RNA Neighboring gene KLF transcription factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888907 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calreticulin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888907.1 Reference Pvam_2.0

    Range
    4702000..4720066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011366883.2 → XP_011365185.1  calreticulin-3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3QS62
    Conserved Domains (1) summary
    pfam00262
    Location:23 → 319
    Calreticulin; Calreticulin family

  2. XM_023534557.1 → XP_023390325.1  calreticulin-3 isoform X2

    UniProtKB/TrEMBL
    A0A6P6CTZ5
    Conserved Domains (1) summary
    pfam00262
    Location:65 → 251
    Calreticulin; Calreticulin family
Nucleotide Protein
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Gene LinkOut

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