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FDPS farnesyl diphosphate synthase [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105296361, updated on 30-Mar-2024

Summary

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Gene symbol
FDPS
Gene description
farnesyl diphosphate synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See FDPS in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888905.1 (1851456..1859482, complement)

NW_011888905.1Genomic Context describing neighboring genes Neighboring gene ASH1 like histone lysine methyltransferase Neighboring gene 5S ribosomal RNA Neighboring gene RUN and SH3 domain containing 1 Neighboring gene pyruvate kinase L/R Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888905 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
farnesyl pyrophosphate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888905.1 Reference Pvam_2.0

    Range
    1851456..1859482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011366414.2 → XP_011364716.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A6P3QKJ4
    Conserved Domains (1) summary
    pfam00348
    Location:54 → 311
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_023534371.1 → XP_023390139.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A6P6CRY0
    Conserved Domains (1) summary
    pfam00348
    Location:115 → 327
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_011366413.2 → XP_011364715.1  farnesyl pyrophosphate synthase isoform X1

    See identical proteins and their annotated locations for XP_011364715.1

    UniProtKB/TrEMBL
    A0A6P3QID8
    Conserved Domains (2) summary
    pfam00348
    Location:122 → 379
    polyprenyl_synt; Polyprenyl synthetase
    cl00210
    Location:23 → 182
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
Nucleotide Protein
Heading Accession and Version

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