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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105294084, updated on 30-Mar-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888863.1 (4847281..5091874, complement)

NW_011888863.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-alpha 1 pseudogene Neighboring gene fatty acyl-CoA reductase 2 Neighboring gene ERGIC and golgi 2 Neighboring gene ovochymase 1 Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC111741820 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene lysosomal-associated transmembrane protein 4A pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888863 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888863.1 Reference Pvam_2.0

    Range
    4847281..5091874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011363119.2 → XP_011361421.2  transmembrane and TPR repeat-containing protein 1

    UniProtKB/TrEMBL
    A0A6P3Q9V8
    Conserved Domains (3) summary
    sd00006
    Location:544 → 572
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:254 → 326
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:431 → 837
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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