U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SGMS2 sphingomyelin synthase 2 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105293007, updated on 30-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SGMS2
Gene description
sphingomyelin synthase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SGMS2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888848.1 (2071154..2144863, complement)

NW_011888848.1Genomic Context describing neighboring genes Neighboring gene lymphoid enhancer binding factor 1 Neighboring gene hydroxyacyl-CoA dehydrogenase Neighboring gene cytochrome P450 2U1 Neighboring gene uncharacterized LOC105293008 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_011888848 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888848.1 Reference Pvam_2.0

    Range
    2071154..2144863 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011361464.2 → XP_011359766.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for XP_011359766.1

    UniProtKB/TrEMBL
    A0A6P3QAP9
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_011361462.2 → XP_011359764.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for XP_011359764.1

    UniProtKB/TrEMBL
    A0A6P3QAP9
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_011361463.2 → XP_011359765.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for XP_011359765.1

    UniProtKB/TrEMBL
    A0A6P3QAP9
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  4. XM_023531360.1 → XP_023387128.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A6P3QAP9
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.