U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ITGA4 integrin subunit alpha 4 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105291916, updated on 30-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ITGA4
Gene description
integrin subunit alpha 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ITGA4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888783.1 (10180391..10263622, complement)

NW_011888783.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene neuronal differentiation 1 Neighboring gene CERK like autophagy regulator Neighboring gene uncharacterized LOC105289826 Neighboring gene 5S ribosomal RNA Neighboring gene ubiquitin conjugating enzyme E2 E3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_011888783 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
integrin alpha-4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888783.1 Reference Pvam_2.0

    Range
    10180391..10263622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011359968.2 → XP_011358270.1  integrin alpha-4

    UniProtKB/TrEMBL
    A0A6P3QD31
    Conserved Domains (2) summary
    smart00191
    Location:348 → 400
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:445 → 884
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.