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UBXN2B UBX domain protein 2B [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105291410, updated on 30-Mar-2024

Summary

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Gene symbol
UBXN2B
Gene description
UBX domain protein 2B
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See UBXN2B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888826.1 (5057251..5084015)

NW_011888826.1Genomic Context describing neighboring genes Neighboring gene swi5-dependent recombination DNA repair protein 1 homolog pseudogene Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene cholesterol 7-alpha-monooxygenase Neighboring gene syndecan binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888826 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888826.1 Reference Pvam_2.0

    Range
    5057251..5084015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023530060.1 → XP_023385828.1  UBX domain-containing protein 2B isoform X2

    UniProtKB/TrEMBL
    A0A6P6CEW7
    Conserved Domains (1) summary
    pfam08059
    Location:147 → 179
    SEP; SEP domain

  2. XM_011359181.2 → XP_011357483.1  UBX domain-containing protein 2B isoform X1

    UniProtKB/TrEMBL
    A0A6P3QFQ5
    Conserved Domains (2) summary
    smart00553
    Location:141 → 233
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cd17161
    Location:251 → 332
    UBX_UBXN2B; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2B (UBXN2B) and similar proteins

RNA

  1. XR_002780049.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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