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SGCD sarcoglycan delta [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105289920, updated on 30-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888811.1 (9926261..11327419, complement)

NW_011888811.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC111737705 Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1 pseudogene Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5 Neighboring gene CCR4-NOT transcription complex subunit 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888811 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888811.1 Reference Pvam_2.0

    Range
    9926261..11327419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023528634.1 → XP_023384402.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P6CAJ5
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 304
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_023528637.1 → XP_023384405.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P6CAJ5
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 304
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_023528635.1 → XP_023384403.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P6CAJ5
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 304
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_023528636.1 → XP_023384404.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P6CAJ5
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 304
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_023528638.1 → XP_023384406.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P6CAJ5
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 304
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_023528639.1 → XP_023384407.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P6CAJ5
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 304
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_011356751.1 → XP_011355053.1  delta-sarcoglycan isoform X2

    See identical proteins and their annotated locations for XP_011355053.1

    UniProtKB/TrEMBL
    A0A6P3Q0S4
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_023528640.1 → XP_023384408.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6P3Q0S4
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  9. XM_023528641.1 → XP_023384409.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A6P6CAJ0
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 234
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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