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PKD1L2 polycystin-1-like protein 2 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105289866, updated on 30-Mar-2024

Summary

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Gene symbol
PKD1L2
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human all
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Genomic context

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See PKD1L2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
42
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888810.1 (2239400..2324442)

NW_011888810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111737628 Neighboring gene beta-carotene oxygenase 1 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 pseudogene Neighboring gene chromosome unknown C16orf46 homolog Neighboring gene glycine cleavage system protein H

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888810 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystic kidney disease protein 1-like 2
Names
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888810.1 Reference Pvam_2.0

    Range
    2239400..2324442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011356680.2 → XP_011354982.1  polycystic kidney disease protein 1-like 2

    UniProtKB/TrEMBL
    A0A6P3Q9G5
    Conserved Domains (5) summary
    cd00037
    Location:38 → 155
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    smart00303
    Location:1216 → 1255
    GPS; G-protein-coupled receptor proteolytic site domain
    cd01752
    Location:1326 → 1445
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam02140
    Location:170 → 252
    Gal_Lectin; Galactose binding lectin domain
    pfam08016
    Location:1921 → 2343
    PKD_channel; Polycystin cation channel
Nucleotide Protein
Heading Accession and Version

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