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MYB MYB proto-oncogene, transcription factor [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105289479, updated on 30-Mar-2024

Summary

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Gene symbol
MYB
Gene description
MYB proto-oncogene, transcription factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See MYB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888805.1 (11269793..11301424, complement)

NW_011888805.1Genomic Context describing neighboring genes Neighboring gene Abelson helper integration site 1 Neighboring gene 5S ribosomal RNA Neighboring gene rho-related GTP-binding protein RhoQ pseudogene Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene dnaJ homolog subfamily A member 1 pseudogene Neighboring gene HBS1 like translational GTPase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888805 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional activator Myb

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888805.1 Reference Pvam_2.0

    Range
    11269793..11301424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011356180.2 → XP_011354482.1  transcriptional activator Myb isoform X1

    See identical proteins and their annotated locations for XP_011354482.1

    UniProtKB/TrEMBL
    A0A6P6C9U2
    Conserved Domains (4) summary
    pfam00249
    Location:20 → 66
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam07988
    Location:249 → 293
    LMSTEN; LMSTEN motif
    pfam09316
    Location:498 → 664
    Cmyb_C; C-myb, C-terminal
    cl28544
    Location:69 → 182
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  2. XM_011356182.2 → XP_011354484.1  transcriptional activator Myb isoform X1

    See identical proteins and their annotated locations for XP_011354484.1

    UniProtKB/TrEMBL
    A0A6P6C9U2
    Conserved Domains (4) summary
    pfam00249
    Location:20 → 66
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam07988
    Location:249 → 293
    LMSTEN; LMSTEN motif
    pfam09316
    Location:498 → 664
    Cmyb_C; C-myb, C-terminal
    cl28544
    Location:69 → 182
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  3. XM_011356181.2 → XP_011354483.1  transcriptional activator Myb isoform X1

    See identical proteins and their annotated locations for XP_011354483.1

    UniProtKB/TrEMBL
    A0A6P6C9U2
    Conserved Domains (4) summary
    pfam00249
    Location:20 → 66
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam07988
    Location:249 → 293
    LMSTEN; LMSTEN motif
    pfam09316
    Location:498 → 664
    Cmyb_C; C-myb, C-terminal
    cl28544
    Location:69 → 182
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  4. XM_023528396.1 → XP_023384164.1  transcriptional activator Myb isoform X1

    UniProtKB/TrEMBL
    A0A6P6C9U2
    Conserved Domains (4) summary
    pfam00249
    Location:20 → 66
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam07988
    Location:249 → 293
    LMSTEN; LMSTEN motif
    pfam09316
    Location:498 → 664
    Cmyb_C; C-myb, C-terminal
    cl28544
    Location:69 → 182
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  5. XM_011356186.2 → XP_011354488.1  transcriptional activator Myb isoform X2

    UniProtKB/TrEMBL
    A0A6P3Q897
    Conserved Domains (4) summary
    pfam00249
    Location:20 → 66
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam07988
    Location:249 → 293
    LMSTEN; LMSTEN motif
    pfam09316
    Location:381 → 543
    Cmyb_C; C-myb, C-terminal
    cl28544
    Location:69 → 182
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Nucleotide Protein
Heading Accession and Version

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