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CHST3 carbohydrate sulfotransferase 3 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105288826, updated on 30-Mar-2024

Summary

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Gene symbol
CHST3
Gene description
carbohydrate sulfotransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See CHST3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888801.1 (122922..160158)

NW_011888801.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC111736492 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 Neighboring gene 5S ribosomal RNA Neighboring gene activating signal cointegrator 1 complex subunit 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888801 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chondroitin 6-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888801.1 Reference Pvam_2.0

    Range
    122922..160158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011355191.2 → XP_011353493.1  carbohydrate sulfotransferase 3

    See identical proteins and their annotated locations for XP_011353493.1

    UniProtKB/TrEMBL
    A0A6P3PTQ0
    Conserved Domains (1) summary
    pfam00685
    Location:265 → 449
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_011355192.2 → XP_011353494.1  carbohydrate sulfotransferase 3

    See identical proteins and their annotated locations for XP_011353494.1

    UniProtKB/TrEMBL
    A0A6P3PTQ0
    Conserved Domains (1) summary
    pfam00685
    Location:265 → 449
    Sulfotransfer_1; Sulfotransferase domain

  3. XM_011355193.2 → XP_011353495.1  carbohydrate sulfotransferase 3

    See identical proteins and their annotated locations for XP_011353495.1

    UniProtKB/TrEMBL
    A0A6P3PTQ0
    Conserved Domains (1) summary
    pfam00685
    Location:265 → 449
    Sulfotransfer_1; Sulfotransferase domain

  4. XM_023527885.1 → XP_023383653.1  carbohydrate sulfotransferase 3

    UniProtKB/TrEMBL
    A0A6P3PTQ0
    Conserved Domains (1) summary
    pfam00685
    Location:265 → 449
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
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