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Atg101 autophagy-related protein 101 [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105288250, updated on 10-Oct-2024

Summary

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Gene symbol
Atg101
Gene description
autophagy-related protein 101
Locus tag
DMN91_010578
See related
EnsemblRapid:LOC105288250
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
fruit fly honey bee all
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Genomic context

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See Atg101 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 11 NC_039516.1 (2453771..2461441, complement)

Chromosome 11 - NC_039516.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105274446 Neighboring gene Ubiquinol-cytochrome c reductase 6.4 kDa subunit Neighboring gene prolactin-releasing peptide receptor Neighboring gene putative ATP-dependent RNA helicase kurz Neighboring gene HLH54F Neighboring gene uncharacterized LOC105288244 Neighboring gene yeti

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039516.1 Chromosome 11 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 101

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039516.1 Reference Obir_v5.4

    Range
    2453771..2461441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011354369.3 → XP_011352671.1  autophagy-related protein 101

    See identical proteins and their annotated locations for XP_011352671.1

    UniProtKB/TrEMBL
    A0A026WYR9
    Related
    XP_011352671.1, XM_011354369.3
    Conserved Domains (1) summary
    pfam07855
    Location:9 → 171
    ATG101; Autophagy-related protein 101

  2. XM_026973678.1 → XP_026829479.1  autophagy-related protein 101

    UniProtKB/TrEMBL
    A0A026WYR9
    Related
    XP_026829479.1, XM_026973678.1
    Conserved Domains (1) summary
    pfam07855
    Location:9 → 171
    ATG101; Autophagy-related protein 101

  3. XM_011354371.3 → XP_011352673.1  autophagy-related protein 101

    See identical proteins and their annotated locations for XP_011352673.1

    UniProtKB/TrEMBL
    A0A026WYR9
    Related
    XP_011352673.1, XM_011354371.3
    Conserved Domains (1) summary
    pfam07855
    Location:9 → 171
    ATG101; Autophagy-related protein 101

  4. XM_011354370.3 → XP_011352672.1  autophagy-related protein 101

    See identical proteins and their annotated locations for XP_011352672.1

    UniProtKB/TrEMBL
    A0A026WYR9
    Related
    XP_011352672.1, XM_011354370.3
    Conserved Domains (1) summary
    pfam07855
    Location:9 → 171
    ATG101; Autophagy-related protein 101

  5. XM_011354367.3 → XP_011352669.1  autophagy-related protein 101

    See identical proteins and their annotated locations for XP_011352669.1

    UniProtKB/TrEMBL
    A0A026WYR9
    Related
    XP_011352669.1, XM_011354367.3
    Conserved Domains (1) summary
    pfam07855
    Location:9 → 171
    ATG101; Autophagy-related protein 101

  6. XM_011354368.3 → XP_011352670.1  autophagy-related protein 101

    See identical proteins and their annotated locations for XP_011352670.1

    UniProtKB/TrEMBL
    A0A026WYR9
    Related
    XP_011352670.1, XM_011354368.3
    Conserved Domains (1) summary
    pfam07855
    Location:9 → 171
    ATG101; Autophagy-related protein 101
Nucleotide Protein
Heading Accession and Version

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