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Nthl1 Nth-like DNA glycosylase 1 [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105288241, updated on 10-Oct-2024

Summary

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Gene symbol
Nthl1
Gene description
Nth-like DNA glycosylase 1
Locus tag
DMN91_011158
See related
EnsemblRapid:LOC105288241
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
fruit fly honey bee all
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Genomic context

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See Nthl1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 11 NC_039516.1 (2525509..2526954)

Chromosome 11 - NC_039516.1Genomic Context describing neighboring genes Neighboring gene GNAT family N-acetyltransferase vnc Neighboring gene protein TSSC4 Neighboring gene nucleolar protein viriato Neighboring gene small ribonucleoprotein particle protein SmD3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039516.1 Chromosome 11 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, AP site formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endonuclease III-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039516.1 Reference Obir_v5.4

    Range
    2525509..2526954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011354355.3 → XP_011352657.1  endonuclease III-like protein 1

    See identical proteins and their annotated locations for XP_011352657.1

    UniProtKB/TrEMBL
    A0A026WYQ9
    Related
    XP_011352657.1, XM_011354355.3
    Conserved Domains (1) summary
    COG0177
    Location:161 → 344
    Nth; Endonuclease III [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

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