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SmD3 small ribonucleoprotein particle protein SmD3 [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105288239, updated on 1-Oct-2024

Summary

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Gene symbol
SmD3
Gene description
small ribonucleoprotein particle protein SmD3
Locus tag
DMN91_011160
See related
EnsemblRapid:LOC105288239
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
honey bee all
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Genomic context

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See SmD3 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 11 NC_039516.1 (2528637..2529584, complement)

Chromosome 11 - NC_039516.1Genomic Context describing neighboring genes Neighboring gene Nth-like DNA glycosylase 1 Neighboring gene nucleolar protein viriato Neighboring gene CLN7/MFS domain-containing 8 Neighboring gene zinc finger C4H2 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039516.1 Chromosome 11 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SMN-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pICln-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein Sm D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039516.1 Reference Obir_v5.4

    Range
    2528637..2529584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011354353.3 → XP_011352655.1  small nuclear ribonucleoprotein Sm D3

    See identical proteins and their annotated locations for XP_011352655.1

    UniProtKB/TrEMBL
    A0A026WW79
    Related
    XP_011352655.1, XM_011354353.3
    Conserved Domains (1) summary
    cd01721
    Location:6 → 75
    Sm_D3; Sm protein D3
Nucleotide Protein
Heading Accession and Version

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Other Literature Sources
Molecular Biology Databases