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calypso ubiquitin carboxyl-terminal hydrolase calypso [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105288213, updated on 1-Oct-2024

Summary

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Gene symbol
calypso
Gene description
ubiquitin carboxyl-terminal hydrolase calypso
Locus tag
DMN91_007685
See related
EnsemblRapid:LOC105288213
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
honey bee all
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Genomic context

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See calypso in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 7 NC_039512.1 (15664084..15669337, complement)

Chromosome 7 - NC_039512.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105288201 Neighboring gene uncharacterized LOC105288219 Neighboring gene uncharacterized LOC113562234 Neighboring gene MIP18 family protein galla-2 Neighboring gene evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039512.1 Chromosome 7 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase calypso

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039512.1 Reference Obir_v5.4

    Range
    15664084..15669337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011354306.3 → XP_011352608.1  ubiquitin carboxyl-terminal hydrolase calypso

    See identical proteins and their annotated locations for XP_011352608.1

    UniProtKB/TrEMBL
    A0A026X405
    Related
    XP_011352608.1, XM_011354306.3
    Conserved Domains (1) summary
    cd09617
    Location:12 → 239
    Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases