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shaker potassium voltage-gated channel protein Shaker [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105288184, updated on 1-Oct-2024

Summary

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Gene symbol
shaker
Gene description
potassium voltage-gated channel protein Shaker
Locus tag
DMN91_010708
See related
EnsemblRapid:LOC105288184
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
honey bee all
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Genomic context

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See shaker in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 11 NC_039516.1 (3319481..3418102, complement)

Chromosome 11 - NC_039516.1Genomic Context describing neighboring genes Neighboring gene pickpocket protein 19 Neighboring gene uncharacterized LOC105288187 Neighboring gene uncharacterized LOC105288186 Neighboring gene uncharacterized LOC105288185 Neighboring gene small ribonucleoprotein particle U1 subunit 70K Neighboring gene uncharacterized LOC109610676 Neighboring gene uncharacterized LOC105288179

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039516.1 Chromosome 11 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables delayed rectifier potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated potassium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium voltage-gated channel protein Shaker

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039516.1 Reference Obir_v5.4

    Range
    3319481..3418102 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011354242.3 → XP_011352544.1  potassium voltage-gated channel protein Shaker isoform X4

    See identical proteins and their annotated locations for XP_011352544.1

    UniProtKB/TrEMBL
    A0A026WWX1
    Related
    XP_011352544.1, XM_011354242.3
    Conserved Domains (4) summary
    smart00225
    Location:97 → 180
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:272 → 486
    Ion_trans; Ion transport protein
    pfam02214
    Location:97 → 182
    BTB_2; BTB/POZ domain
    pfam07885
    Location:400 → 477
    Ion_trans_2; Ion channel

  2. XM_011354241.3 → XP_011352543.1  potassium voltage-gated channel protein Shaker isoform X4

    See identical proteins and their annotated locations for XP_011352543.1

    UniProtKB/TrEMBL
    A0A026WWX1
    Related
    XP_011352543.1, XM_011354241.3
    Conserved Domains (4) summary
    smart00225
    Location:97 → 180
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:272 → 486
    Ion_trans; Ion transport protein
    pfam02214
    Location:97 → 182
    BTB_2; BTB/POZ domain
    pfam07885
    Location:400 → 477
    Ion_trans_2; Ion channel

  3. XM_011354240.2 → XP_011352542.1  potassium voltage-gated channel protein Shaker isoform X3

    UniProtKB/TrEMBL
    A0A026WWX1
    Related
    XP_011352542.1, XM_011354240.2
    Conserved Domains (4) summary
    smart00225
    Location:97 → 180
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:272 → 486
    Ion_trans; Ion transport protein
    pfam02214
    Location:97 → 182
    BTB_2; BTB/POZ domain
    pfam07885
    Location:401 → 477
    Ion_trans_2; Ion channel

  4. XM_011354249.3 → XP_011352551.1  potassium voltage-gated channel protein Shaker isoform X8

    See identical proteins and their annotated locations for XP_011352551.1

    UniProtKB/TrEMBL
    A0A026WWX1
    Related
    XP_011352551.1, XM_011354249.3
    Conserved Domains (4) summary
    smart00225
    Location:47 → 130
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:222 → 436
    Ion_trans; Ion transport protein
    pfam02214
    Location:47 → 132
    BTB_2; BTB/POZ domain
    pfam07885
    Location:350 → 427
    Ion_trans_2; Ion channel

  5. XM_011354247.3 → XP_011352549.1  potassium voltage-gated channel protein Shaker isoform X8

    See identical proteins and their annotated locations for XP_011352549.1

    UniProtKB/TrEMBL
    A0A026WWX1
    Related
    XP_011352549.1, XM_011354247.3
    Conserved Domains (4) summary
    smart00225
    Location:47 → 130
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:222 → 436
    Ion_trans; Ion transport protein
    pfam02214
    Location:47 → 132
    BTB_2; BTB/POZ domain
    pfam07885
    Location:350 → 427
    Ion_trans_2; Ion channel

  6. XM_011354246.3 → XP_011352548.1  potassium voltage-gated channel protein Shaker isoform X7

    UniProtKB/TrEMBL
    A0A026WWX1
    Related
    XP_011352548.1, XM_011354246.3
    Conserved Domains (4) summary
    smart00225
    Location:65 → 148
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:240 → 454
    Ion_trans; Ion transport protein
    pfam02214
    Location:65 → 150
    BTB_2; BTB/POZ domain
    pfam07885
    Location:369 → 445
    Ion_trans_2; Ion channel

  7. XM_011354243.3 → XP_011352545.1  potassium voltage-gated channel protein Shaker isoform X6

    See identical proteins and their annotated locations for XP_011352545.1

    UniProtKB/TrEMBL
    A0A026WWX1
    Related
    XP_011352545.1, XM_011354243.3
    Conserved Domains (4) summary
    smart00225
    Location:65 → 148
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:240 → 454
    Ion_trans; Ion transport protein
    pfam02214
    Location:65 → 150
    BTB_2; BTB/POZ domain
    pfam07885
    Location:368 → 445
    Ion_trans_2; Ion channel

  8. XM_011354238.3 → XP_011352540.1  potassium voltage-gated channel protein Shaker isoform X2

    Related
    XP_011352540.1, XM_011354238.3
    Conserved Domains (4) summary
    smart00225
    Location:171 → 254
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:346 → 560
    Ion_trans; Ion transport protein
    pfam02214
    Location:171 → 256
    BTB_2; BTB/POZ domain
    pfam07885
    Location:475 → 551
    Ion_trans_2; Ion channel

  9. XM_011354236.3 → XP_011352538.1  potassium voltage-gated channel protein Shaker isoform X1

    UniProtKB/TrEMBL
    A0A3L8D818
    Related
    XP_011352538.1, XM_011354236.3
    Conserved Domains (2) summary
    pfam00520
    Location:298 → 560
    Ion_trans; Ion transport protein
    pfam02214
    Location:171 → 256
    BTB_2; BTB/POZ domain

  10. XM_011354244.3 → XP_011352546.1  potassium voltage-gated channel protein Shaker isoform X6

    See identical proteins and their annotated locations for XP_011352546.1

    UniProtKB/TrEMBL
    A0A026WWX1
    Related
    XP_011352546.1, XM_011354244.3
    Conserved Domains (4) summary
    smart00225
    Location:65 → 148
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:240 → 454
    Ion_trans; Ion transport protein
    pfam02214
    Location:65 → 150
    BTB_2; BTB/POZ domain
    pfam07885
    Location:368 → 445
    Ion_trans_2; Ion channel

  11. XM_011354245.3 → XP_011352547.1  potassium voltage-gated channel protein Shaker isoform X6

    See identical proteins and their annotated locations for XP_011352547.1

    UniProtKB/TrEMBL
    A0A026WWX1
    Related
    XP_011352547.1, XM_011354245.3
    Conserved Domains (4) summary
    smart00225
    Location:65 → 148
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:240 → 454
    Ion_trans; Ion transport protein
    pfam02214
    Location:65 → 150
    BTB_2; BTB/POZ domain
    pfam07885
    Location:368 → 445
    Ion_trans_2; Ion channel

  12. XM_020034550.2 → XP_019890109.1  potassium voltage-gated channel protein Shaker isoform X5

    Related
    XP_019890109.1, XM_020034550.2
    Conserved Domains (2) summary
    pfam00520
    Location:298 → 520
    Ion_trans; Ion transport protein
    pfam02214
    Location:171 → 256
    BTB_2; BTB/POZ domain
Nucleotide Protein
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