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Tmtc2 Transmembrane O-mannosyltransferase targeting cadherins 2 [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105287628, updated on 10-Oct-2024

Summary

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Gene symbol
Tmtc2
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 2
Locus tag
DMN91_004661
See related
EnsemblRapid:LOC105287628
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
fruit fly honey bee all
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Genomic context

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See Tmtc2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 5 NC_039510.1 (3866986..4054368, complement)

Chromosome 5 - NC_039510.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105287630 Neighboring gene UDP-glucuronosyltransferase 2B15 Neighboring gene uncharacterized LOC109611551 Neighboring gene dosage compensation protein dpy-30

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039510.1 Chromosome 5 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein CG4341

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039510.1 Reference Obir_v5.4

    Range
    3866986..4054368 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011353273.2 → XP_011351575.1  transmembrane and TPR repeat-containing protein CG4341 isoform X1

    UniProtKB/TrEMBL
    A0A3L8DQ71
    Related
    XP_011351575.1, XM_011353273.2
    Conserved Domains (3) summary
    sd00006
    Location:508 → 536
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:241 → 311
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:496 → 840
    TPR_11; TPR repeat

  2. XM_011353276.3 → XP_011351578.1  transmembrane and TPR repeat-containing protein CG4341 isoform X2

    Related
    XP_011351578.1, XM_011353276.3
    Conserved Domains (5) summary
    smart00028
    Location:621 → 654
    TPR; Tetratricopeptide repeats
    sd00006
    Location:508 → 536
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:542 → 574
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:241 → 311
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:508 → 573
    TPR_11; TPR repeat

RNA

  1. XR_003406588.1 RNA Sequence

    Related
    XR_003406588.1
Nucleotide Protein
Heading Accession and Version

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