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Stt3B catalytic subunit 3B of the oligosaccharyltransferase complex [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105282998, updated on 10-Oct-2024

Summary

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Gene symbol
Stt3B
Gene description
catalytic subunit 3B of the oligosaccharyltransferase complex
Locus tag
DMN91_012649
See related
EnsemblRapid:LOC105282998
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
fruit fly honey bee all
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Genomic context

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See Stt3B in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 14 NC_039519.1 (7360754..7365493)

Chromosome 14 - NC_039519.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase ctrip Neighboring gene zinc finger protein 62 Neighboring gene uncharacterized LOC105283049 Neighboring gene bromodomain-containing protein 4 Neighboring gene uncharacterized LOC109611222 Neighboring gene Dysbindin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039519.1 Chromosome 14 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-translational protein modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039519.1 Reference Obir_v5.4

    Range
    7360754..7365493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011345370.3 → XP_011343672.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B isoform X1

    See identical proteins and their annotated locations for XP_011343672.1

    UniProtKB/TrEMBL
    A0A026W564
    Related
    XP_011343672.1, XM_011345370.3
    Conserved Domains (1) summary
    pfam02516
    Location:52 → 549
    STT3; Oligosaccharyl transferase STT3 subunit

  2. XM_011345371.3 → XP_011343673.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B isoform X2

    Related
    XP_011343673.1, XM_011345371.3
    Conserved Domains (2) summary
    COG1287
    Location:29 → 766
    Stt3; Asparagine N-glycosylation enzyme, membrane subunit Stt3 [Posttranslational modification, protein turnover, chaperones]
    pfam02516
    Location:52 → 549
    STT3; Oligosaccharyl transferase STT3 subunit

  3. XM_011345372.3 → XP_011343674.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B isoform X3

    Related
    XP_011343674.1, XM_011345372.3
    Conserved Domains (2) summary
    COG1287
    Location:29 → 766
    Stt3; Asparagine N-glycosylation enzyme, membrane subunit Stt3 [Posttranslational modification, protein turnover, chaperones]
    pfam02516
    Location:52 → 549
    STT3; Oligosaccharyl transferase STT3 subunit
Nucleotide Protein
Heading Accession and Version

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