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LOC105282292 transmembrane and TPR repeat-containing protein 4 [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105282292, updated on 1-Oct-2024

Summary

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Gene symbol
LOC105282292
Gene description
transmembrane and TPR repeat-containing protein 4
Locus tag
DMN91_010188
See related
EnsemblRapid:LOC105282292
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
honey bee all
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Genomic context

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See LOC105282292 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 10 NC_039515.1 (6499174..6506508)

Chromosome 10 - NC_039515.1Genomic Context describing neighboring genes Neighboring gene nuclear factor related to kappaB binding protein Neighboring gene histone-lysine N-methyltransferase SETMAR-like Neighboring gene peroxin 19 Neighboring gene proximal sequence element A Pbp49 Neighboring gene structure specific recognition protein Neighboring gene TP53-regulated inhibitor of apoptosis 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039515.1 Chromosome 10 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039515.1 Reference Obir_v5.4

    Range
    6499174..6506508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011344168.3 → XP_011342470.2  transmembrane and TPR repeat-containing protein 4 isoform X1

    Related
    XP_011342470.2, XM_011344168.3
    Conserved Domains (3) summary
    COG0457
    Location:479 → 745
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:496 → 524
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:274 → 346
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_011344169.3 → XP_011342471.2  transmembrane and TPR repeat-containing protein 4 isoform X2

    Related
    XP_011342471.2, XM_011344169.3
    Conserved Domains (3) summary
    COG0457
    Location:461 → 713
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:599 → 626
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:274 → 346
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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