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LOC105282027 N-acetylgalactosaminyltransferase 7 [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105282027, updated on 10-May-2024

Summary

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Gene symbol
LOC105282027
Gene description
N-acetylgalactosaminyltransferase 7
Locus tag
DMN91_007627
See related
EnsemblRapid:LOC105282027
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 7 NC_039512.1 (5523355..5526941)

Chromosome 7 - NC_039512.1Genomic Context describing neighboring genes Neighboring gene WASH complex subunit 1 Neighboring gene carboxypeptidase N subunit 2 Neighboring gene carnitine/acylcarnitine carrier protein colt, mitochondrial Neighboring gene chaperonin containing TCP1 subunit 4 Neighboring gene uncharacterized LOC105282030 Neighboring gene uncharacterized LOC105282032

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039512.1 Chromosome 7 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylgalactosaminyltransferase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039512.1 Reference Obir_v5.4

    Range
    5523355..5526941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020032552.2 → XP_019888111.1  N-acetylgalactosaminyltransferase 7 isoform X1

    UniProtKB/TrEMBL
    A0A026W9A9
    Related
    XP_019888111.1, XM_020032552.2
    Conserved Domains (2) summary
    cd02510
    Location:158 → 465
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:481 → 595
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_011343680.3 → XP_011341982.1  N-acetylgalactosaminyltransferase 7 isoform X2

    UniProtKB/TrEMBL
    A0A3L8DKW0
    Related
    XP_011341982.1, XM_011343680.3
    Conserved Domains (2) summary
    cd02510
    Location:150 → 457
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:473 → 587
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_011343682.3 → XP_011341984.1  N-acetylgalactosaminyltransferase 7 isoform X3

    See identical proteins and their annotated locations for XP_011341984.1

    Related
    XP_011341984.1, XM_011343682.3
    Conserved Domains (4) summary
    cd02510
    Location:135 → 442
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:130 → 430
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:459 → 574
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:458 → 572
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_011343681.3 → XP_011341983.1  N-acetylgalactosaminyltransferase 7 isoform X3

    See identical proteins and their annotated locations for XP_011341983.1

    Related
    XP_011341983.1, XM_011343681.3
    Conserved Domains (4) summary
    cd02510
    Location:135 → 442
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:130 → 430
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:459 → 574
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:458 → 572
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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Other Literature Sources
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