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LOC105279720 chitin synthase chs-2 [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105279720, updated on 1-Oct-2024

Summary

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Gene symbol
LOC105279720
Gene description
chitin synthase chs-2
Locus tag
DMN91_007089
See related
EnsemblRapid:LOC105279720
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
honey bee all
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Genomic context

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See LOC105279720 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
19
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 7 NC_039512.1 (12742559..12750758, complement)

Chromosome 7 - NC_039512.1Genomic Context describing neighboring genes Neighboring gene phosducin-like protein Neighboring gene uncharacterized LOC105279724 Neighboring gene complex I intermediate-associated protein 30 Neighboring gene BRCA1-associated protein Neighboring gene DEAD-box ATP-dependent RNA helicase 20 Neighboring gene Superoxide dismutase 1 Neighboring gene Megator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039512.1 Chromosome 7 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitin synthase chs-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039512.1 Reference Obir_v5.4

    Range
    12742559..12750758 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011339671.3 → XP_011337973.1  chitin synthase chs-2

    UniProtKB/TrEMBL
    A0A3L8DKP6
    Related
    XP_011337973.1, XM_011339671.3
    Conserved Domains (2) summary
    COG1215
    Location:750 → 1088
    BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]
    cl11394
    Location:587 → 912
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases