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sfl N-deacetylase and N-sulfotransferase sfl [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105277738, updated on 10-Oct-2024

Summary

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Gene symbol
sfl
Gene description
N-deacetylase and N-sulfotransferase sfl
Locus tag
DMN91_011948
See related
EnsemblRapid:LOC105277738
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
fruit fly honey bee all
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Genomic context

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See sfl in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 12 NC_039517.1 (5802718..6027909, complement)

Chromosome 12 - NC_039517.1Genomic Context describing neighboring genes Neighboring gene mitochondrial calcium uniporter Neighboring gene javelin Neighboring gene signal sequence receptor beta Neighboring gene uncharacterized LOC105277739 Neighboring gene uncharacterized LOC105277737 Neighboring gene crooked

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039517.1 Chromosome 12 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039517.1 Reference Obir_v5.4

    Range
    5802718..6027909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011336331.2 → XP_011334633.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    See identical proteins and their annotated locations for XP_011334633.1

    UniProtKB/TrEMBL
    A0A3L8D8D8
    Related
    XP_011334633.1, XM_011336331.2
    Conserved Domains (2) summary
    pfam00685
    Location:609 → 857
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:38 → 520
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_011336330.2 → XP_011334632.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    See identical proteins and their annotated locations for XP_011334632.1

    UniProtKB/TrEMBL
    A0A3L8D8D8
    Related
    XP_011334632.1, XM_011336330.2
    Conserved Domains (2) summary
    pfam00685
    Location:609 → 857
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:38 → 520
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_011336329.3 → XP_011334631.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    See identical proteins and their annotated locations for XP_011334631.1

    UniProtKB/TrEMBL
    A0A3L8D8D8
    Related
    XP_011334631.1, XM_011336329.3
    Conserved Domains (2) summary
    pfam00685
    Location:609 → 857
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:38 → 520
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

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Other Literature Sources
Molecular Biology Databases