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LOC105277401 zinc finger BED domain-containing protein 1 [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105277401, updated on 1-Oct-2024

Summary

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Gene symbol
LOC105277401
Gene description
zinc finger BED domain-containing protein 1
Locus tag
DMN91_002481
See related
EnsemblRapid:LOC105277401
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
honey bee all
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Genomic context

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See LOC105277401 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 3 NC_039508.1 (1309094..1312769, complement)

Chromosome 3 - NC_039508.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 138 Neighboring gene chromatin assembly factor 1, p105 subunit Neighboring gene uncharacterized LOC109610847 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class B Neighboring gene RNA-binding protein fusilli Neighboring gene uncharacterized LOC105277395

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039508.1 Chromosome 3 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger BED domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039508.1 Reference Obir_v5.4

    Range
    1309094..1312769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011335744.3 → XP_011334046.1  zinc finger BED domain-containing protein 1

    See identical proteins and their annotated locations for XP_011334046.1

    UniProtKB/TrEMBL
    A0A026WNK0
    Related
    XP_011334046.1, XM_011335744.3
    Conserved Domains (2) summary
    pfam02892
    Location:54 → 102
    zf-BED; BED zinc finger
    pfam05699
    Location:644 → 723
    Dimer_Tnp_hAT; hAT family C-terminal dimerisation region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases