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LOC105277397 RNA-binding protein fusilli [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105277397, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105277397
Gene description
RNA-binding protein fusilli
Locus tag
DMN91_002620
See related
EnsemblRapid:LOC105277397
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
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Genomic context

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See LOC105277397 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 3 NC_039508.1 (1321740..1352173)

Chromosome 3 - NC_039508.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein 1 Neighboring gene uncharacterized LOC109610847 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class B Neighboring gene uncharacterized LOC105277395 Neighboring gene protein bark beetle Neighboring gene Zeste-white 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039508.1 Chromosome 3 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein fusilli

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039508.1 Reference Obir_v5.4

    Range
    1321740..1352173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011335738.3 → XP_011334040.1  RNA-binding protein fusilli isoform X1

    UniProtKB/TrEMBL
    A0A026WNJ7, A0A3L8DVT1
    Related
    XP_011334040.1, XM_011335738.3
    Conserved Domains (4) summary
    cd12743
    Location:488 → 572
    RRM3_Fusilli; RNA recognition motif 3 in Drosophila RNA-binding protein Fusilli and similar proteins
    cl10012
    Location:38 → 209
    DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily
    cl17169
    Location:347 → 445
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl27975
    Location:679 → 787
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  2. XM_011335739.3 → XP_011334041.1  RNA-binding protein fusilli isoform X2

    Related
    XP_011334041.1, XM_011335739.3
    Conserved Domains (4) summary
    cd12743
    Location:488 → 572
    RRM3_Fusilli; RNA recognition motif 3 in Drosophila RNA-binding protein Fusilli and similar proteins
    pfam15671
    Location:608 → 710
    PRR18; Proline-rich protein family 18
    cl10012
    Location:38 → 209
    DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily
    cl17169
    Location:347 → 445
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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Other Literature Sources
Molecular Biology Databases