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Pgant2 polypeptide N-acetylgalactosaminyltransferase 2 [ Camponotus floridanus (Florida carpenter ant) ]

Gene ID: 105249375, updated on 10-Oct-2024

Summary

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Gene symbol
Pgant2
Gene description
polypeptide N-acetylgalactosaminyltransferase 2
Locus tag
EAG_09304
See related
EnsemblRapid:LOC105249375
Gene type
protein coding
RefSeq status
MODEL
Organism
Camponotus floridanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Formicinae; Camponotus
Orthologs
fruit fly honey bee all
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Genomic context

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See Pgant2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Cflo_v7.5 (GCF_003227725.1) Unplaced Scaffold NW_020229248.1 (642284..858834)
101 previous assembly CamFlo_1.0 (GCF_000147175.1) Unplaced Scaffold NW_011879515.1 (31736..36963)

NW_020229248.1Genomic Context describing neighboring genes Neighboring gene UBX domain-containing protein 11-like Neighboring gene sialin Neighboring gene glutamic acid-rich protein-like Neighboring gene Cubilin Neighboring gene POU domain protein 2 Neighboring gene KRR1 small subunit processome component homolog dbe Neighboring gene uncharacterized LOC112637085

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camponotus floridanus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cflo_v7.5

Genomic

  1. NW_020229248.1 Reference Cflo_v7.5

    Range
    642284..858834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025406038.1 → XP_025261823.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X3

    Related
    XP_025261823.1, XM_025406038.1
    Conserved Domains (2) summary
    cd02510
    Location:123 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:440 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_025406036.1 → XP_025261821.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

    Related
    XP_025261821.1, XM_025406036.1
    Conserved Domains (2) summary
    cd02510
    Location:142 → 437
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:459 → 565
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_025406035.1 → XP_025261820.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

    Related
    XP_025261820.1, XM_025406035.1
    Conserved Domains (2) summary
    cd02510
    Location:143 → 438
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:460 → 566
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_025406037.1 → XP_025261822.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X3

    Related
    XP_025261822.1, XM_025406037.1
    Conserved Domains (2) summary
    cd02510
    Location:123 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:440 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  5. XM_025406039.1 → XP_025261824.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X4

    UniProtKB/TrEMBL
    E2A7V1
    Related
    XP_025261824.1, XM_025406039.1
    Conserved Domains (2) summary
    cd02510
    Location:78 → 373
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:395 → 501
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  6. XM_020026971.2 → XP_019882530.2  polypeptide N-acetylgalactosaminyltransferase 2 isoform X5

    UniProtKB/TrEMBL
    E2A7V1
    Related
    XP_019882530.2, XM_020026971.2
    Conserved Domains (2) summary
    cd02510
    Location:76 → 358
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:380 → 486
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein Strain
Heading Accession and Version

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