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Gm42221 predicted gene, 42221 [ Mus musculus (house mouse) ]

Gene ID: 105247043, updated on 17-Aug-2024

Summary

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Official Symbol
Gm42221provided by MGI
Official Full Name
predicted gene, 42221provided by MGI
Primary source
MGI:MGI:5625106
See related
AllianceGenome:MGI:5625106
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm42221 in Genome Data Viewer
Location:
5 A3; 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (21261074..21301447)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (21056067..21096449)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene round spermatid basic protein 1-like Neighboring gene RIKEN cDNA A630072M18 gene Neighboring gene STARR-seq mESC enhancer starr_12556 Neighboring gene STARR-seq mESC enhancer starr_12557 Neighboring gene STARR-seq mESC enhancer starr_12559 Neighboring gene STARR-positive B cell enhancer mm9_chr5:20484581-20484882 Neighboring gene STARR-positive B cell enhancer mm9_chr5:20508606-20508906 Neighboring gene protein tyrosine phosphatase, non-receptor type 12 Neighboring gene STARR-positive B cell enhancer ABC_E10306 Neighboring gene STARR-seq mESC enhancer starr_12560 Neighboring gene STARR-positive B cell enhancer mm9_chr5:20561662-20561962 Neighboring gene STARR-seq mESC enhancer starr_12561 Neighboring gene ribosomal protein L31, pseudogene 21 Neighboring gene predicted gene, 22490

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    21261074..21301447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_880864.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials