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Sox21os1 SRY (sex determining region Y)-box 21, opposite strand 1 [ Mus musculus (house mouse) ]

Gene ID: 105245869, updated on 2-Nov-2024

Summary

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Official Symbol
Sox21os1provided by MGI
Official Full Name
SRY (sex determining region Y)-box 21, opposite strand 1provided by MGI
Primary source
MGI:MGI:3782856
See related
Ensembl:ENSMUSG00000090534 AllianceGenome:MGI:3782856
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm4675; 100043825
Summary
Orthologous to human SOX21-AS1 (SOX21 antisense divergent transcript 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in stomach adult (RPKM 7.8), CNS E11.5 (RPKM 2.9) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See Sox21os1 in Genome Data Viewer
Location:
14 E4; 14 61.92 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (118473644..118498611)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (118236232..118261199)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933431J24 gene Neighboring gene predicted gene, 31981 Neighboring gene predicted gene, 32045 Neighboring gene STARR-seq mESC enhancer starr_37639 Neighboring gene SRY (sex determining region Y)-box 21 Neighboring gene microRNA 6241 Neighboring gene predicted gene 9376 Neighboring gene predicted gene, 23669

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. Hezroni H, et al. Cell Rep, 2015 May 19. PMID 25959816, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131969.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks one exon and includes two alternate exons, compared to variant 1.
    Source sequence(s)
    BE654891, CT025686

  2. NR_131970.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK039417, CT025686
    Related
    ENSMUST00000164755.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    118473644..118498611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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