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Gm40113 predicted gene, 40113 [ Mus musculus (house mouse) ]

Gene ID: 105244519, updated on 22-Oct-2024

Summary

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Official Symbol
Gm40113provided by MGI
Official Full Name
predicted gene, 40113provided by MGI
Primary source
MGI:MGI:5622998
See related
Ensembl:ENSMUSG00000142234 AllianceGenome:MGI:5622998
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm40113 in Genome Data Viewer
Location:
3 F2.2; 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (103096609..103104040, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (103189293..103196724, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08586 Neighboring gene DENN domain containing 2C Neighboring gene STARR-seq mESC enhancer starr_08590 Neighboring gene STARR-seq mESC enhancer starr_08592 Neighboring gene STARR-positive B cell enhancer mm9_chr3:102975364-102975665 Neighboring gene STARR-seq mESC enhancer starr_08594 Neighboring gene BCAS2 pre-mRNA processing factor Neighboring gene STARR-seq mESC enhancer starr_08595 Neighboring gene STARR-seq mESC enhancer starr_08596 Neighboring gene STARR-positive B cell enhancer mm9_chr3:103010366-103010667 Neighboring gene STARR-seq mESC enhancer starr_08597 Neighboring gene STARR-seq mESC enhancer starr_08598 Neighboring gene STARR-positive B cell enhancer mm9_chr3:103082888-103083189 Neighboring gene tripartite motif-containing 33 Neighboring gene STARR-positive B cell enhancer mm9_chr3:103182003-103182304 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:103190717-103190948 Neighboring gene predicted gene, 25009

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    103096609..103104040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001784063.1 RNA Sequence

  2. XR_867536.3 RNA Sequence

    Related
    ENSMUST00000369765.1

  3. XR_003954540.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials