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Gm40011 predicted gene, 40011 [ Mus musculus (house mouse) ]

Gene ID: 105244392, updated on 17-Aug-2024

Summary

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Official Symbol
Gm40011provided by MGI
Official Full Name
predicted gene, 40011provided by MGI
Primary source
MGI:MGI:5622896
See related
AllianceGenome:MGI:5622896
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 3.6), subcutaneous fat pad adult (RPKM 1.1) and 5 other tissues See more
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Genomic context

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See Gm40011 in Genome Data Viewer
Location:
2 H3; 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (172924573..172980047)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (173082780..173138200)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:172879441-172879628 Neighboring gene predicted gene, 36337 Neighboring gene predicted gene, 36462 Neighboring gene predicted gene, 36417 Neighboring gene STARR-seq mESC enhancer starr_06608 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:172908254-172908455 Neighboring gene STARR-positive B cell enhancer ABC_E2064 Neighboring gene VISTA enhancer mm1693 Neighboring gene STARR-positive B cell enhancer ABC_E8953 Neighboring gene CCCTC-binding factor like Neighboring gene STARR-positive B cell enhancer ABC_E4527 Neighboring gene CCCTC-binding factor like, opposite strand Neighboring gene STARR-seq mESC enhancer starr_06610 Neighboring gene predicted gene, 36691 Neighboring gene predicted gene, 36749 Neighboring gene STARR-positive B cell enhancer ABC_E9076 Neighboring gene phosphoenolpyruvate carboxykinase 1, cytosolic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
uncharacterized protein Gm40011

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    172924573..172980047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239899.2 → XP_011238201.1  uncharacterized protein Gm40011 isoform X2

  2. XM_011239900.1 → XP_011238202.1  uncharacterized protein Gm40011 isoform X3

    See identical proteins and their annotated locations for XP_011238202.1

  3. XM_011239897.1 → XP_011238199.1  uncharacterized protein Gm40011 isoform X1

    See identical proteins and their annotated locations for XP_011238199.1

  4. XM_011239901.1 → XP_011238203.1  uncharacterized protein Gm40011 isoform X4

    See identical proteins and their annotated locations for XP_011238203.1

RNA

  1. XR_867074.1 RNA Sequence

  2. XR_867075.1 RNA Sequence

  3. XR_001783590.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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