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Gm39871 predicted gene, 39871 [ Mus musculus (house mouse) ]

Gene ID: 105244224, updated on 17-Aug-2024

Summary

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Official Symbol
Gm39871provided by MGI
Official Full Name
predicted gene, 39871provided by MGI
Primary source
MGI:MGI:5622756
See related
AllianceGenome:MGI:5622756
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 2.1) See more
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Genomic context

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See Gm39871 in Genome Data Viewer
Location:
2 E1; 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (90466460..90500640, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (90636116..90670296, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10123 Neighboring gene predicted gene, 46752 Neighboring gene STARR-seq mESC enhancer starr_05092 Neighboring gene STARR-positive B cell enhancer ABC_E5942 Neighboring gene predicted gene, 39870 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:90481961-90482070 Neighboring gene STARR-positive B cell enhancer mm9_chr2:90490258-90490559 Neighboring gene STARR-positive B cell enhancer ABC_E7838 Neighboring gene STARR-positive B cell enhancer mm9_chr2:90519352-90519653 Neighboring gene STARR-seq mESC enhancer starr_05093 Neighboring gene nucleoporin 160 Neighboring gene STARR-seq mESC enhancer starr_05095 Neighboring gene predicted gene, 39872 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:90585318-90585501 Neighboring gene ribosomal protein L30, pseudogene 3 Neighboring gene formin binding protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    90466460..90500640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_866519.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials