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ANKFN1 ankyrin repeat and fibronectin type III domain containing 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 105236013, updated on 13-Mar-2024

Summary

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Gene symbol
ANKFN1
Gene description
ankyrin repeat and fibronectin type III domain containing 1
Locus tag
PANDA_003695
See related
Ensembl:ENSAMEG00000002831
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See ANKFN1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
21
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 13 NC_048230.1 (15787660..16173327, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217389.1 (1423504..1476419, complement)

Chromosome 13 - NC_048230.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117795763 Neighboring gene noggin Neighboring gene uncharacterized LOC117795562 Neighboring gene delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial-like Neighboring gene phosphatidylcholine transfer protein Neighboring gene transmembrane protein 100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment of mitotic spindle orientation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of establishment of bipolar cell polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and fibronectin type-III domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048230.1 Reference ASM200744v2 Primary Assembly

    Range
    15787660..16173327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034640636.1 → XP_034496527.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    G1L7V8
    Related
    ENSAMEP00000028945.1, ENSAMET00000044690.1

  2. XM_034640637.1 → XP_034496528.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    G1L7V8
    Related
    ENSAMEP00000002974.2, ENSAMET00000003100.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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