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LOC105226084 eukaryotic translation initiation factor 2 subunit 3 [ Bactrocera dorsalis (oriental fruit fly) ]

Gene ID: 105226084, updated on 25-Jan-2024

Summary

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Gene symbol
LOC105226084
Gene description
eukaryotic translation initiation factor 2 subunit 3
See related
EnsemblRapid:LOC105226084
Gene type
protein coding
RefSeq status
MODEL
Organism
Bactrocera dorsalis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Bactrocera
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Genomic context

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See LOC105226084 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM2337382v1 (GCF_023373825.1) 2 NC_064304.1 (101384287..101390602)
102 previous assembly ASM78921v2 (GCF_000789215.1) Unplaced Scaffold NW_011876337.1 (110167..116383, complement)

Chromosome 2 - NC_064304.1Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit O, mitochondrial Neighboring gene NAP domain-containing protein SET Neighboring gene hypothetical protein Neighboring gene zinc finger protein 611 Neighboring gene GPN-loop GTPase 3 Neighboring gene IC cytokine homolog beag

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA sequencing to characterize transcriptional changes of sexual maturation and mating in the female oriental fruit fly Bactrocera dorsalis. Zheng W, et al. BMC Genomics, 2016 Mar 5. PMID 26946038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in formation of translation preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational fidelity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of eukaryotic translation initiation factor 2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 2 subunit 3; histone-lysine N-methyltransferase Su(var)3-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bactrocera dorsalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2337382v1 Primary Assembly

Genomic

  1. NC_064304.1 Reference ASM2337382v1 Primary Assembly

    Range
    101384287..101390602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019990179.3 → XP_019845738.1  histone-lysine N-methyltransferase Su(var)3-9 isoform X1

    UniProtKB/TrEMBL
    A0A6J0RGX7
    Related
    XP_019845738.1, XM_019990179.3
    Conserved Domains (3) summary
    PTZ00327
    Location:11 → 80
    PTZ00327; eukaryotic translation initiation factor 2 gamma subunit; Provisional
    cd10542
    Location:414 → 649
    SET_SUV39H; SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homologs, SUV39H1, SUV39H2 and similar proteins
    cl28914
    Location:240 → 281
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  2. XM_019990180.3 → XP_019845739.1  eukaryotic translation initiation factor 2 subunit 3 isoform X2

    UniProtKB/TrEMBL
    A0A034VGU8
    Related
    XP_019845739.1, XM_019990180.3
    Conserved Domains (1) summary
    PTZ00327
    Location:11 → 465
    PTZ00327; eukaryotic translation initiation factor 2 gamma subunit; Provisional
Nucleotide Protein
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